Abstracts

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Conference Paper
C. Stoeckert, Birtwell, D., Freedman, H., Miller, M., and Williams, H., ICBO_2018_12: Transforming and Unifying Research with Biomedical Ontologies: The Penn TURBO project, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
A. Barton, Grenier, O., and Ethier, J. - F., ICBO_2018_13: The Identity and Mereology of Pathological Dispositions, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
P. Manda, Beasley, L., and Mohanty, S., ICBO_2018_18: Taking a Dive: Experiments in Deep Learning for Automatic Ontology-based Annotation of Scientific Literature, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
S. Laulederkind, G. Hayman, T., Wang, S. - J., Bolton, E., Smith, J. R., Tutaj, M., de Pons, J., Shimoyama, M., and Dwinell, M., ICBO_2018_2: Adapting Disease Vocabularies for Curation at the Rat Genome Database, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
J. Leonardo Mejino, Detwiler, L., Cox, T., Cunningham, M., and Brinkley, J., ICBO_2018_26: Multi-species Malformation Ontologies, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
Y. He, Steck, B., Ong, E., Mariani, L., Lienczewski, C., Balis, U., Kretzler, M., Himmelfarb, J., Bertram, J. F., Azeloglu, E., Iyengar, R., Hoshizaki, D., and Mooney, S. D., ICBO_2018_28: KTAO: A kidney tissue atlas ontology to support community-based kidney knowledge base development and data integration, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
Y. He, Steck, B., Ong, E., Mariani, L., Lienczewski, C., Balis, U., Kretzler, M., Himmelfarb, J., Bertram, J. F., Azeloglu, E., Iyengar, R., Hoshizaki, D., and Mooney, S. D., ICBO_2018_28: KTAO: A kidney tissue atlas ontology to support community-based kidney knowledge base development and data integration, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
B. Farrell and Bengtson, J., ICBO_2018_3: Ontology based data architecture to promote data sharing in electrophysiology, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
H. Küçük-Mcginty, Clark, A., Graybeal, J., Cooper, D., Turner, J., Dorf, M., Musen, M., Bunin, B., and Schurer, S., ICBO_2018_32: Ontolobridge – A Semi-Automated Ontology Update Request System for Better FAIR-ifying BioAssay Ontology, Drug Target Ontology, and LINCS Ontology, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
O. Bodenreider and James, J., ICBO_2018_36: The New SNOMED CT International Medicinal Product Model, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
J. Bona, Nolan, T., and Brochhausen, M., ICBO_2018_37: Ontology-Enhanced Representations of Non-image Data in The Cancer Image Archive, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
J. Bona, Nolan, T., and Brochhausen, M., ICBO_2018_37: Ontology-Enhanced Representations of Non-image Data in The Cancer Image Archive, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
J. - P. Gourdine, Vasilevsky, N., Winfree, L., Brush, M., and Haendel, M., ICBO_2018_38: Expanding the Molecular Glycophenotype Ontology to include model organisms and acquired diseases, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
L. Beasley and Manda, P., ICBO_2018_4: Comparison of Natural Language Processing Tools for Automatic Gene Ontology Annotation of Scientific Literature, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
S. Sarntivijai, Juty, N., Goble, C., Parkinson, H., Evelo, C., Lanfear, J., and Blomberg, N., ICBO_2018_42: ELIXIR Interoperability: Standardisation of identifiers, schemas, and ontologies for scientific communities, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
R. Tauber, Balhoff, J., Douglass, E., Mungall, C., and Overton, J. A., ICBO_2018_46: Standardizing Ontology Workflows Using ROBOT, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
L. Endara, Burleigh, G., Cooper, L., Jaiswal, P., Laporte, M. - A., and Cui, H., ICBO_2018_50: A Natural Language Processing Pipeline to extract phenotypic data from formal taxonomic descriptions with a Focus on Flagellate Plants, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
T. Pells, Fisher, M., Segerdell, E., Fortriede, J., Burns, K., Chu, S., Chaturvedi, P., James-Zorn, C., Lotay, V., Nenni, M., Ponferrada, V. G., Wang, D. Zhou, Wang, Y., Karimi, K., Vize, P., and Zorn, A., ICBO_2018_53: Visualization of gene expression and expression as a phenotype with the XPO, XAO and DO using a combination of experimental data sources, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
C. Hayes, Bona, J., and Brochhausen, M., ICBO_2018_56: Towards the Development of an Opioid Misuse Ontology, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
C. Hayes, Bona, J., and Brochhausen, M., ICBO_2018_56: Towards the Development of an Opioid Misuse Ontology, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
I. Braun and Lawrence-Dill, C., ICBO_2018_58: Computational Classification of Phenologs Across Biological Diversity, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
N. J. Otte, Stansbury, C., Vajda, J., Manion, F., Umberfield, E., He, Y., Harris, M., Obeid, J., Brochhausen, M., Duncan, W., and Tao, C., ICBO_2018_59: Coordinated Evolution of Ontologies of Informed Consent, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
J. Bisson, Graham, J., and Pauli, G., ICBO_2018_6: PHO: The Pharmacognosy Ontology, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
W. Duncan, Thyvalikakath, T., Siddiqui, Z., LaPradd, M., Wen, C., Zheng, J., Roberts, A., Hood, D., Schleyer, T., Manimangalam, A., Rindal, D., Jurkovich, M., Shea, T., Bogacz, D., Yu, T., Fellows, J., Gordan, V., and Gilbert, G., ICBO_2018_61: Using the Oral Health and Disease Ontology to Study Dental Outcomes in National Dental PBRN Practices, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
P. Mabee, Balhoff, J., Dahdul, W., Lapp, H., Mungall, C., and Vision, T., ICBO_2018_62: Reasoning over anatomical homology in the Phenoscape KB, in International Conference on Biomedical Ontology (ICBO 2018), 2018.

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