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Abstracts

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A. Maria Masci, McCall, S., Racioppi, A., Ellis, H. Judge, Obeid, J. S., Smith, B., Stoeckert, C., and Zheng, J., ICBO_2018_10: Standardization of the Histopathology Cancer Report: An Ontological Approach, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
A. Maria Masci, McCall, S., Racioppi, A., Ellis, H. Judge, Obeid, J. S., Smith, B., Stoeckert, C., and Zheng, J., ICBO_2018_10: Standardization of the Histopathology Cancer Report: An Ontological Approach, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
D. Trigkakis, Preece, J., Meier, A., Elser, J., Kvilekval, K., Fedorov, D., Manjunath, B. S., Jaiswal, P., and Todorovic, S., ICBO_2018_11: Planteome & BisQue: Automating Image Annotation with Ontologies using Deep-Learning Networks, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
D. Trigkakis, Preece, J., Meier, A., Elser, J., Kvilekval, K., Fedorov, D., Manjunath, B. S., Jaiswal, P., and Todorovic, S., ICBO_2018_11: Planteome & BisQue: Automating Image Annotation with Ontologies using Deep-Learning Networks, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
C. Stoeckert, Birtwell, D., Freedman, H., Miller, M., and Williams, H., ICBO_2018_12: Transforming and Unifying Research with Biomedical Ontologies: The Penn TURBO project, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
M. Halper, Ochs, C., Perl, Y., Arabandi, S., and Musen, M., ICBO_2018_15: Quality Assurance of Ontology Content Reuse, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
C. Mejía and Collado-Vides, J., ICBO_2018_16: A falsification approach to create and check ontology definitions, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
P. Manda, Beasley, L., and Mohanty, S., ICBO_2018_18: Taking a Dive: Experiments in Deep Learning for Automatic Ontology-based Annotation of Scientific Literature, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
P. Manda, Beasley, L., and Mohanty, S., ICBO_2018_18: Taking a Dive: Experiments in Deep Learning for Automatic Ontology-based Annotation of Scientific Literature, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
R. Tauber, Munro, J. B., Nadendla, S., Chunara, B., Chibucos, M. C., and Giglio, M., ICBO_2018_19: Current Development in the Evidence and Conclusion Ontology (ECO), in International Conference on Biomedical Ontology (ICBO 2018), 2018.
N. Matentzoglu and Osumi-Sutherland, D., ICBO_2018_22: Reconciling ontology definitions using the Ontology Pattern Reconciliation Workbench and the DOSDP framework, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
M. Horridge, Gonçalves, R. S., Nyulas, C. I., Tudorache, T., and Musen, M., ICBO_2018_23: Protégé 5.5 – Improvements for Editing Biomedical Ontologies, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
A. Meier, Laporte, M. - A., Elser, J., Cooper, L., Preece, J., Jaiswal, P., and Poelen, J., ICBO_2018_25: OOPS: The Ontology of Plant Stress, A semi-automated standardization methodology, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
J. Leonardo Mejino, Detwiler, L., Cox, T., Cunningham, M., and Brinkley, J., ICBO_2018_26: Multi-species Malformation Ontologies, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
Y. He, Steck, B., Ong, E., Mariani, L., Lienczewski, C., Balis, U., Kretzler, M., Himmelfarb, J., Bertram, J. F., Azeloglu, E., Iyengar, R., Hoshizaki, D., and Mooney, S. D., ICBO_2018_28: KTAO: A kidney tissue atlas ontology to support community-based kidney knowledge base development and data integration, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
Y. He, Steck, B., Ong, E., Mariani, L., Lienczewski, C., Balis, U., Kretzler, M., Himmelfarb, J., Bertram, J. F., Azeloglu, E., Iyengar, R., Hoshizaki, D., and Mooney, S. D., ICBO_2018_28: KTAO: A kidney tissue atlas ontology to support community-based kidney knowledge base development and data integration, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
H. Küçük-Mcginty, Clark, A., Graybeal, J., Cooper, D., Turner, J., Dorf, M., Musen, M., Bunin, B., and Schurer, S., ICBO_2018_32: Ontolobridge – A Semi-Automated Ontology Update Request System for Better FAIR-ifying BioAssay Ontology, Drug Target Ontology, and LINCS Ontology, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
D. Dinakarpandian, Dinakar, B., Liedtke, M., and Musen, M., ICBO_2018_39: TOCSOC: A temporal ontology for comparing the survival outcomes of clinical trials in oncology, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
L. Beasley and Manda, P., ICBO_2018_4: Comparison of Natural Language Processing Tools for Automatic Gene Ontology Annotation of Scientific Literature, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
R. Tauber, Balhoff, J., Douglass, E., Mungall, C., and Overton, J. A., ICBO_2018_46: Standardizing Ontology Workflows Using ROBOT, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
P. Manda and Vision, T., ICBO_2018_47: On the statistical sensitivity of semantic similarity metrics, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
M. Massoud, ICBO_2018_48: Evidence-based medicine,Knowledge Modeling Framework, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
P. Fernando, Zeng, E., and Mabee, P., ICBO_2018_52: The integrative use of anatomy ontology and protein-protein interaction networks to study evolutionary phenotypic transitions, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
K. - L. Ma, ICBO_2018_55: Visualization: A Powerful Tool for Data Exploration and Storytelling, in International Conference on Biomedical Ontology (ICBO 2018), 2018.
N. J. Otte, Stansbury, C., Vajda, J., Manion, F., Umberfield, E., He, Y., Harris, M., Obeid, J., Brochhausen, M., Duncan, W., and Tao, C., ICBO_2018_59: Coordinated Evolution of Ontologies of Informed Consent, in International Conference on Biomedical Ontology (ICBO 2018), 2018.

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